HL_7ODE_016

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

7ODE|1|I|U|571, 7ODE|1|I|U|573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODE_016 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.2912

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7ODE|1|I|U|566
7ODE|1|I|U|567
7ODE|1|I|U|568
7ODE|1|I|U|569
7ODE|1|I|G|570
7ODE|1|I|U|571
7ODE|1|I|A|572
7ODE|1|I|U|573
7ODE|1|I|A|574
7ODE|1|I|A|575

Current chains

Chain I

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L21