HL_7ODE_018

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODE_018 not in the Motif Atlas

Geometric match to HL_5J7L_154

Geometric discrepancy: 0.1726

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7ODE|1|I|G|712
7ODE|1|I|G|713
7ODE|1|I|U|714
7ODE|1|I|A|715
7ODE|1|I|A|716
7ODE|1|I|C|717
7ODE|1|I|A|718
7ODE|1|I|C|719

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2