HL_7ODE_030

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7ODE|1|I|G|1452, 7ODE|1|I|A|1453, 7ODE|1|I|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODE_030 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.1534

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7ODE|1|I|C|1451
7ODE|1|I|G|1452
7ODE|1|I|A|1453
7ODE|1|I|C|1454
7ODE|1|I|G|1455
7ODE|1|I|G|1456
7ODE|1|I|U|1457
7ODE|1|I|U|1458
7ODE|1|I|G|1459

Current chains

Chain I

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L17