HL_7ODE_042

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GUGAUGC

Length

7 nucleotides

Bulged bases

7ODE|1|I|G|2029

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODE_042 not in the Motif Atlas

Homologous match to HL_8VTW_049

Geometric discrepancy: 0.4902

The information below is about HL_8VTW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7ODE|1|I|G|2027
7ODE|1|I|U|2028
7ODE|1|I|G|2029
7ODE|1|I|A|2033
7ODE|1|I|U|2034
7ODE|1|I|G|2035
7ODE|1|I|C|2036

Current chains

Chain I

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L32