HL_7ODR_007

3D structure

PDB id

7ODR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State A of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAAAGA

Length

7 nucleotides

Bulged bases

7ODR|1|A|A|1937, 7ODR|1|A|G|1939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODR_007 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.2353

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

7ODR|1|A|U|1934
7ODR|1|A|A|1935
7ODR|1|A|A|1936
7ODR|1|A|A|1937
7ODR|1|A|A|1938
7ODR|1|A|G|1939
7ODR|1|A|A|1940

Current chains

Chain A

16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial