HL_7ODR_017

3D structure

PDB id

7ODR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State A of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAACAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODR_017 not in the Motif Atlas

Geometric match to HL_4U7U_001

Geometric discrepancy: 0.2399

The information below is about HL_4U7U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

7ODR|1|A|A|2319
7ODR|1|A|A|2320
7ODR|1|A|A|2321
7ODR|1|A|C|2322
7ODR|1|A|A|2323
7ODR|1|A|U|2324

Current chains

Chain A

16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain O

39S ribosomal protein L17, mitochondrial

Chain s

39S ribosomal protein S30, mitochondrial