HL_7ODS_006
3D structure
- PDB id
- 7ODS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State B of the human mitoribosomal large subunit assembly intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGAGC
- Length
- 6 nucleotides
- Bulged bases
- 7ODS|1|A|G|1886
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ODS_006 not in the Motif Atlas
- Geometric match to HL_7RQB_011
- Geometric discrepancy: 0.2004
- The information below is about HL_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_70546.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 18
Unit IDs
7ODS|1|A|G|1884
7ODS|1|A|A|1885
7ODS|1|A|G|1886
7ODS|1|A|A|1887
7ODS|1|A|G|1888
7ODS|1|A|C|1889
Current chains
- Chain A
- 16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA
Nearby chains
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain g
- 39S ribosomal protein L49, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
- Chain q
- Growth arrest and DNA damage-inducible proteins-interacting protein 1
Coloring options: