HL_7ODS_033

3D structure

PDB id

7ODS (explore in PDB, NAKB, or RNA 3D Hub)

Description

State B of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODS_033 not in the Motif Atlas

Homologous match to HL_7RQB_063

Geometric discrepancy: 0.1281

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7ODS|1|A|A|3081
7ODS|1|A|G|3082
7ODS|1|A|U|3083
7ODS|1|A|A|3084
7ODS|1|A|A|3085
7ODS|1|A|U|3086

Current chains

Chain A

16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial

Chain x

5-methylcytosine rRNA methyltransferase NSUN4

Chain y

Transcription termination factor 4, mitochondrial