HL_7ODS_034

3D structure

PDB id

7ODS (explore in PDB, NAKB, or RNA 3D Hub)

Description

State B of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODS_034 not in the Motif Atlas

Geometric match to HL_5FJC_002

Geometric discrepancy: 0.1061

The information below is about HL_5FJC_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7ODS|1|A|C|3126
7ODS|1|A|G|3127
7ODS|1|A|A|3128
7ODS|1|A|A|3129
7ODS|1|A|A|3130
7ODS|1|A|G|3131

Current chains

Chain A

16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA

Nearby chains

Chain u

Mitochondrial assembly of ribosomal large subunit protein 1