HL_7ODT_007

3D structure

PDB id

7ODT (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAAAGA

Length

7 nucleotides

Bulged bases

7ODT|1|A|A|1937, 7ODT|1|A|G|1939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODT_007 not in the Motif Atlas

Geometric match to HL_4WSB_001

Geometric discrepancy: 0.2649

The information below is about HL_4WSB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

7ODT|1|A|U|1934
7ODT|1|A|A|1935
7ODT|1|A|A|1936
7ODT|1|A|A|1937
7ODT|1|A|A|1938
7ODT|1|A|G|1939
7ODT|1|A|A|1940

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial