HL_7ODT_026

3D structure

PDB id

7ODT (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGGGCG

Length

7 nucleotides

Bulged bases

7ODT|1|A|G|2815, 7ODT|1|A|G|2816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODT_026 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.157

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7ODT|1|A|U|2813
7ODT|1|A|G|2814
7ODT|1|A|G|2815
7ODT|1|A|G|2816
7ODT|1|A|G|2817
7ODT|1|A|C|2818
7ODT|1|A|G|2819

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain N

39S ribosomal protein L16, mitochondrial

Chain t

Mitochondrial ribosome-associated GTPase 2

Chain x

5-methylcytosine rRNA methyltransferase NSUN4