HL_7ODT_040

3D structure

PDB id

7ODT (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUUAACU

Length

8 nucleotides

Bulged bases

7ODT|1|B|C|1652

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODT_040 not in the Motif Atlas

Geometric match to HL_5TBW_076

Geometric discrepancy: 0.3172

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7ODT|1|B|A|1651
7ODT|1|B|C|1652
7ODT|1|B|U|1653
7ODT|1|B|U|1654
7ODT|1|B|A|1655
7ODT|1|B|A|1656
7ODT|1|B|C|1657
7ODT|1|B|U|1658

Current chains

Chain B

mitochondrial tRNAVal

Nearby chains

Chain 6

39S ribosomal protein L38, mitochondrial