HL_7OF0_018

3D structure

PDB id

7OF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

7OF0|1|A|A|2363

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF0_018 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1777

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7OF0|1|A|G|2349
7OF0|1|A|A|2350
7OF0|1|A|U|2351
7OF0|1|A|A|2363
7OF0|1|A|C|2364

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

39S ribosomal protein L22, mitochondrial

Chain U

39S ribosomal protein L23, mitochondrial

Chain d

39S ribosomal protein L45, mitochondrial

Chain s

39S ribosomal protein S30, mitochondrial