HL_7OF0_019

3D structure

PDB id

7OF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCAACCA

Length

7 nucleotides

Bulged bases

7OF0|1|A|C|2393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF0_019 not in the Motif Atlas

Geometric match to HL_1U6B_002

Geometric discrepancy: 0.3562

The information below is about HL_1U6B_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12125.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7OF0|1|A|U|2392
7OF0|1|A|C|2393
7OF0|1|A|A|2394
7OF0|1|A|A|2395
7OF0|1|A|C|2396
7OF0|1|A|C|2397
7OF0|1|A|A|2398

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial