HL_7OF1_049

3D structure

PDB id

7OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7OF1|1|1|A|2372, 7OF1|1|1|A|2373, 7OF1|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF1_049 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.2043

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7OF1|1|1|G|2369
7OF1|1|1|G|2370
7OF1|1|1|G|2371
7OF1|1|1|A|2372
7OF1|1|1|A|2373
7OF1|1|1|C|2374
7OF1|1|1|G|2375
7OF1|1|1|G|2376
7OF1|1|1|G|2377
7OF1|1|1|C|2378

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L32