HL_7OF1_068

3D structure

PDB id

7OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7OF1|1|2|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF1_068 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.2115

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7OF1|1|2|G|124
7OF1|1|2|U|125
7OF1|1|2|A|126
7OF1|1|2|U|127
7OF1|1|2|U|128
7OF1|1|2|C|129

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA