HL_7OF2_025

3D structure

PDB id

7OF2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAACACCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF2_025 not in the Motif Atlas

Geometric match to HL_5E6M_002

Geometric discrepancy: 0.3862

The information below is about HL_5E6M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55735.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7OF2|1|A|A|2753
7OF2|1|A|A|2754
7OF2|1|A|A|2755
7OF2|1|A|C|2756
7OF2|1|A|A|2792
7OF2|1|A|C|2793
7OF2|1|A|C|2794
7OF2|1|A|U|2795

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

39S ribosomal protein L9, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial