HL_7OF3_034

3D structure

PDB id

7OF3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF3_034 not in the Motif Atlas

Geometric match to HL_5TBW_017

Geometric discrepancy: 0.0767

The information below is about HL_5TBW_017

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OF3|1|A|C|3126
7OF3|1|A|G|3127
7OF3|1|A|A|3128
7OF3|1|A|A|3129
7OF3|1|A|A|3130
7OF3|1|A|G|3131

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain u

Mitochondrial assembly of ribosomal large subunit protein 1