HL_7OF5_007

3D structure

PDB id

7OF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAAAGA

Length

7 nucleotides

Bulged bases

7OF5|1|A|A|1937, 7OF5|1|A|G|1939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF5_007 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.1385

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

7OF5|1|A|U|1934
7OF5|1|A|A|1935
7OF5|1|A|A|1936
7OF5|1|A|A|1937
7OF5|1|A|A|1938
7OF5|1|A|G|1939
7OF5|1|A|A|1940

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial