HL_7OF7_014

3D structure

PDB id

7OF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

7OF7|1|A|A|2181

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF7_014 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3737

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OF7|1|A|C|2175
7OF7|1|A|C|2176
7OF7|1|A|U|2177
7OF7|1|A|A|2178
7OF7|1|A|A|2179
7OF7|1|A|A|2180
7OF7|1|A|A|2181
7OF7|1|A|G|2182
7OF7|1|A|C|2183
7OF7|1|A|A|2184
7OF7|1|A|G|2185

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial