HL_7OG4_065

3D structure

PDB id

7OG4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

(P5P)(Y5P)(Y5P)(Y5P)(P5P)(P5P)(Y5P)(Y5P)(Y5P)

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OG4_065 not in the Motif Atlas

Geometric match to HL_3F2X_001

Geometric discrepancy: 0.1755

The information below is about HL_3F2X_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7OG4|1|r3|P5P|53
7OG4|1|r3|Y5P|54
7OG4|1|r3|Y5P|55
7OG4|1|r3|Y5P|56
7OG4|1|r3|P5P|57
7OG4|1|r3|P5P|58
7OG4|1|r3|Y5P|59
7OG4|1|r3|Y5P|60
7OG4|1|r3|Y5P|61

Current chains

Chain r3

P/E-tRNA

Nearby chains

Chain q

Growth arrest and DNA damage-inducible proteins-interacting protein 1