3D structure

PDB id
7OH3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGGGGC
Length
6 nucleotides
Bulged bases
7OH3|1|1|G|2371
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OH3_051 not in the Motif Atlas
Geometric match to HL_4WF9_003
Geometric discrepancy: 0.1517
The information below is about HL_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

7OH3|1|1|G|2369
7OH3|1|1|G|2370
7OH3|1|1|G|2371
7OH3|1|1|G|2376
7OH3|1|1|G|2377
7OH3|1|1|C|2378

Current chains

Chain 1
25S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain e
60S ribosomal protein L32
Chain f
60S ribosomal protein L33-A
Chain s
Nuclear GTP-binding protein NUG1

Coloring options:


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