HL_7OH3_062

3D structure

PDB id

7OH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

7OH3|1|1|G|2922, 7OH3|1|1|C|2925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OH3_062 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.1753

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

7OH3|1|1|U|2920
7OH3|1|1|U|2921
7OH3|1|1|G|2922
7OH3|1|1|U|2923
7OH3|1|1|U|2924
7OH3|1|1|C|2925
7OH3|1|1|A|2926

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain b

Nucleolar GTP-binding protein 1

Chain m

Nucleolar GTP-binding protein 2