HL_7OHP_008

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUAUG

Length

6 nucleotides

Bulged bases

7OHP|1|1|A|285

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHP_008 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1419

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7OHP|1|1|U|278
7OHP|1|1|U|279
7OHP|1|1|U|280
7OHP|1|1|A|285
7OHP|1|1|U|286
7OHP|1|1|G|287

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A