HL_7OHP_013

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGCCGGUAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHP_013 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3706

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7OHP|1|1|U|540
7OHP|1|1|U|541
7OHP|1|1|G|542
7OHP|1|1|C|543
7OHP|1|1|C|544
7OHP|1|1|G|547
7OHP|1|1|G|548
7OHP|1|1|U|549
7OHP|1|1|A|550
7OHP|1|1|A|551

Current chains

Chain 1

25S rRNA

Nearby chains