HL_7OHP_017

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHP_017 not in the Motif Atlas

Geometric match to HL_8G9Z_003

Geometric discrepancy: 0.226

The information below is about HL_8G9Z_003

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7OHP|1|1|C|732
7OHP|1|1|G|733
7OHP|1|1|A|735
7OHP|1|1|A|736
7OHP|1|1|G|737

Current chains

Chain 1

25S rRNA

Nearby chains