HL_7OHP_026

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUGAUAUGC

Length

10 nucleotides

Bulged bases

7OHP|1|1|G|1349, 7OHP|1|1|U|1356

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHP_026 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2868

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7OHP|1|1|G|1346
7OHP|1|1|U|1347
7OHP|1|1|U|1348
7OHP|1|1|G|1349
7OHP|1|1|A|1350
7OHP|1|1|U|1351
7OHP|1|1|A|1355
7OHP|1|1|U|1356
7OHP|1|1|G|1357
7OHP|1|1|C|1358

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Q

60S ribosomal protein L18-A