HL_7OHP_034

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

7OHP|1|1|U|3195, 7OHP|1|1|U|3198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHP_034 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.2738

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7OHP|1|1|C|3193
7OHP|1|1|C|3194
7OHP|1|1|U|3195
7OHP|1|1|U|3196
7OHP|1|1|G|3197
7OHP|1|1|U|3198
7OHP|1|1|G|3199

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain O

60S ribosomal protein L16-A