HL_7OHP_036

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

7OHP|1|1|U|3304

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHP_036 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.2301

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7OHP|1|1|G|3303
7OHP|1|1|U|3304
7OHP|1|1|A|3305
7OHP|1|1|U|3306
7OHP|1|1|A|3307
7OHP|1|1|C|3308
7OHP|1|1|G|3309
7OHP|1|1|A|3310
7OHP|1|1|C|3311

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3