HL_7OHQ_039

3D structure

PDB id

7OHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

7OHQ|1|1|U|1764, 7OHQ|1|1|U|1765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHQ_039 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1969

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7OHQ|1|1|C|1759
7OHQ|1|1|A|1760
7OHQ|1|1|C|1761
7OHQ|1|1|C|1762
7OHQ|1|1|U|1763
7OHQ|1|1|U|1764
7OHQ|1|1|U|1765
7OHQ|1|1|G|1766

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A