HL_7OHQ_056

3D structure

PDB id

7OHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHQ_056 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.5716

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7OHQ|1|1|C|2693
7OHQ|1|1|A|2694
7OHQ|1|1|A|2695
7OHQ|1|1|A|2696
7OHQ|1|1|A|2697
7OHQ|1|1|G|2698
7OHQ|1|1|G|2699
7OHQ|1|1|G|2700

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain v

Ribosome biogenesis protein RPF2