HL_7OHQ_080
3D structure
- PDB id
- 7OHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- 7OHQ|1|1|U|2842, 7OHQ|1|1|U|2843
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OHQ_080 not in the Motif Atlas
- Geometric match to HL_2B3J_001
- Geometric discrepancy: 0.3788
- The information below is about HL_2B3J_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_42293.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7OHQ|1|1|C|2840
7OHQ|1|1|G|2841
7OHQ|1|1|U|2842
7OHQ|1|1|U|2843
7OHQ|1|1|C|2844
7OHQ|1|1|A|2845
7OHQ|1|1|U|2846
7OHQ|1|1|A|2847
7OHQ|1|1|G|2848
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 5
- rRNA-processing protein CGR1
- Chain S
- 60S ribosomal protein L20-A
- Chain s
- Nuclear GTP-binding protein NUG1
Coloring options: