HL_7OHV_031

3D structure

PDB id

7OHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

7OHV|1|1|A|1638

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHV_031 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.3008

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OHV|1|1|G|1634
7OHV|1|1|G|1635
7OHV|1|1|U|1636
7OHV|1|1|A|1637
7OHV|1|1|A|1638
7OHV|1|1|C|1639

Current chains

Chain 1

25S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27-A

Chain m

Ribosome biogenesis protein ERB1