HL_7OHV_038

3D structure

PDB id

7OHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7OHV|1|1|A|2373

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHV_038 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1179

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7OHV|1|1|G|2369
7OHV|1|1|G|2370
7OHV|1|1|G|2371
7OHV|1|1|A|2372
7OHV|1|1|A|2373
7OHV|1|1|C|2374
7OHV|1|1|G|2375
7OHV|1|1|G|2376
7OHV|1|1|G|2377
7OHV|1|1|C|2378

Current chains

Chain 1

25S rRNA

Nearby chains