HL_7OI0_017

3D structure

PDB id

7OI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta rbfA pre-30S ribosomal subunit class D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

7OI0|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OI0_017 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.369

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

7OI0|1|A|G|786
7OI0|1|A|A|787
7OI0|1|A|U|788
7OI0|1|A|U|789
7OI0|1|A|A|790
7OI0|1|A|G|791
7OI0|1|A|A|792
7OI0|1|A|U|793
7OI0|1|A|A|794
7OI0|1|A|C|795
7OI0|1|A|C|796

Current chains

Chain A

16S rRNA

Nearby chains