HL_7OI7_022

3D structure

PDB id

7OI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAACACCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OI7_022 not in the Motif Atlas

Geometric match to HL_5E6M_002

Geometric discrepancy: 0.3866

The information below is about HL_5E6M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37734.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

7OI7|1|A|A|1083
7OI7|1|A|A|1084
7OI7|1|A|A|1085
7OI7|1|A|C|1086
7OI7|1|A|A|1122
7OI7|1|A|C|1123
7OI7|1|A|C|1124
7OI7|1|A|U|1125

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

39S ribosomal protein L9, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial