HL_7OI8_011

3D structure

PDB id

7OI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

7OI8|1|A|A|440, 7OI8|1|A|G|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OI8_011 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2734

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7OI8|1|A|G|437
7OI8|1|A|G|438
7OI8|1|A|A|439
7OI8|1|A|A|440
7OI8|1|A|C|441
7OI8|1|A|A|442
7OI8|1|A|G|443
7OI8|1|A|C|444

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial