HL_7OIB_011

3D structure

PDB id

7OIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

7OIB|1|A|A|440, 7OIB|1|A|G|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIB_011 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2348

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7OIB|1|A|G|437
7OIB|1|A|G|438
7OIB|1|A|A|439
7OIB|1|A|A|440
7OIB|1|A|C|441
7OIB|1|A|A|442
7OIB|1|A|G|443
7OIB|1|A|C|444

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial