HL_7OID_028

3D structure

PDB id

7OID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGGGGCGA

Length

9 nucleotides

Bulged bases

7OID|1|A|G|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OID_028 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.159

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

7OID|1|A|U|1142
7OID|1|A|U|1143
7OID|1|A|G|1144
7OID|1|A|G|1145
7OID|1|A|G|1146
7OID|1|A|G|1147
7OID|1|A|C|1148
7OID|1|A|G|1149
7OID|1|A|A|1150

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

39S ribosomal protein L16, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial