HL_7OIE_005
3D structure
- PDB id
- 7OIE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUCUGCAUAA
- Length
- 10 nucleotides
- Bulged bases
- 7OIE|1|A|A|185
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OIE_005 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.0961
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
7OIE|1|A|U|177
7OIE|1|A|U|178
7OIE|1|A|C|179
7OIE|1|A|U|180
7OIE|1|A|G|181
7OIE|1|A|C|182
7OIE|1|A|A|183
7OIE|1|A|U|184
7OIE|1|A|A|185
7OIE|1|A|A|186
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 0
- 39S ribosomal protein L32, mitochondrial
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
Coloring options: