HL_7OIE_020

3D structure

PDB id

7OIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

7OIE|1|A|A|762, 7OIE|1|A|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIE_020 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1707

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7OIE|1|A|C|758
7OIE|1|A|A|759
7OIE|1|A|A|760
7OIE|1|A|C|761
7OIE|1|A|A|762
7OIE|1|A|C|763
7OIE|1|A|A|764
7OIE|1|A|G|765

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain T

39S ribosomal protein L22, mitochondrial