HL_7OIE_036

3D structure

PDB id

7OIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIE_036 not in the Motif Atlas

Geometric match to HL_4V88_211

Geometric discrepancy: 0.1456

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OIE|1|A|C|1456
7OIE|1|A|G|1457
7OIE|1|A|A|1458
7OIE|1|A|A|1459
7OIE|1|A|A|1460
7OIE|1|A|G|1461

Current chains

Chain A

16S rRNA

Nearby chains

Chain u

Mitochondrial assembly of ribosomal large subunit protein 1