HL_7OIG_111

3D structure

PDB id

7OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIG_111 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.1711

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7OIG|1|1|G|2304
7OIG|1|1|U|2305
7OIG|1|1|C|2306
7OIG|1|1|G|2307
7OIG|1|1|G|2308
7OIG|1|1|A|2309
7OIG|1|1|C|2310
7OIG|1|1|A|2311
7OIG|1|1|U|2312

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain z

Transfer RNA; tRNA