HL_7OII_098

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OII_098 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0875

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7OII|1|2|C|1314
7OII|1|2|U|1315
7OII|1|2|G|1316
7OII|1|2|C|1317
7OII|1|2|A|1318
7OII|1|2|A|1319
7OII|1|2|C|1320
7OII|1|2|U|1321
7OII|1|2|C|1322
7OII|1|2|G|1323

Current chains

Chain 2

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S13

Chain r

30S ribosomal protein S14

Chain w

30S ribosomal protein S19