HL_7OIZ_034
3D structure
- PDB id
- 7OIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 70S ribosome stalled with TnaC peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(5MU)UCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 7OIZ|1|V|U|55
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OIZ_034 not in the Motif Atlas
- Homologous match to HL_5AH5_008
- Geometric discrepancy: 0.1796
- The information below is about HL_5AH5_008
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
7OIZ|1|V|G|53
7OIZ|1|V|5MU|54
7OIZ|1|V|U|55
7OIZ|1|V|C|56
7OIZ|1|V|A|57
7OIZ|1|V|A|58
7OIZ|1|V|A|59
7OIZ|1|V|U|60
7OIZ|1|V|C|61
Current chains
- Chain V
- tRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
- Chain l
- 50S ribosomal protein L16
Coloring options: