HL_7OIZ_060
3D structure
- PDB id
- 7OIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 70S ribosome stalled with TnaC peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(PSU)GCUAACGU
- Length
- 10 nucleotides
- Bulged bases
- 7OIZ|1|a|U|958, 7OIZ|1|a|C|961
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OIZ_060 not in the Motif Atlas
- Homologous match to HL_5J7L_159
- Geometric discrepancy: 0.0872
- The information below is about HL_5J7L_159
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OIZ|1|a|G|954
7OIZ|1|a|PSU|955
7OIZ|1|a|G|956
7OIZ|1|a|C|957
7OIZ|1|a|U|958
7OIZ|1|a|A|959
7OIZ|1|a|A|960
7OIZ|1|a|C|961
7OIZ|1|a|G|962
7OIZ|1|a|U|963
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- Small subunit ribosomal RNA fragment; SSU rRNA fragment
- Chain l
- 50S ribosomal protein L16
Coloring options: