HL_7OIZ_066

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7OIZ|1|a|U|1396, 7OIZ|1|a|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIZ_066 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0964

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OIZ|1|a|G|1389
7OIZ|1|a|U|1390
7OIZ|1|a|U|1391
7OIZ|1|a|A|1392
7OIZ|1|a|A|1393
7OIZ|1|a|U|1394
7OIZ|1|a|A|1395
7OIZ|1|a|U|1396
7OIZ|1|a|U|1397
7OIZ|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23