HL_7OJ0_012

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7OJ0|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2609

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7OJ0|1|A|G|462
7OJ0|1|A|U|463
7OJ0|1|A|U|464
7OJ0|1|A|A|465
7OJ0|1|A|A|466
7OJ0|1|A|U|467
7OJ0|1|A|A|468
7OJ0|1|A|C|469
7OJ0|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains