HL_7OJ0_013

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_013 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2332

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7OJ0|1|A|G|521
7OJ0|1|A|C|522
7OJ0|1|A|A|523
7OJ0|1|A|G|524
7OJ0|1|A|C|525
7OJ0|1|A|C|526
7OJ0|1|A|G7M|527
7OJ0|1|A|C|528

Current chains

Chain A

16S rRNA

Nearby chains

Chain 6

Alternative ribosome-rescue factor A

Chain L

30S ribosomal protein S12