HL_7OJ0_038

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

7OJ0|1|a|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_038 not in the Motif Atlas

Geometric match to HL_4AY2_001

Geometric discrepancy: 0.1364

The information below is about HL_4AY2_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7OJ0|1|a|U|137
7OJ0|1|a|U|138
7OJ0|1|a|U|139
7OJ0|1|a|C|140
7OJ0|1|a|G|141
7OJ0|1|a|A|142

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23